Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q proteina.fa -t GPx3_caballus.1.subseq.fa]
Hostname: [ws116052]

C4 Alignment:
------------
         Query: GPx3_caballus
        Target: KI538108.1:subseq(803401,200182) Balaenoptera acutorostrata scammoni unplaced genomic scaffold scaffold49, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 862
   Query range: 0 -> 195
  Target range: 102319 -> 99999

      1 : AspCysHisAlaGlyValSerGlyThrIleTyrGluTyrGlyAlaLeuThrIleAspG :     20
          ||||||!.!||||||||||||.!!||||||||||||||||||||||||.!!|||||||
          AspCysArgAlaGlyValSerSerThrIleTyrGluTyrGlyAlaLeuAlaIleAspG
 102319 : GACTGCCGTGCTGGCGTGAGCAGCACCATCTATGAGTATGGAGCCCTCGCCATTGACG : 102262

     21 : lyGluGluTyrIleProPheLysGlnTyrAlaGlyLysTyrIleLeuPheValAsnVa :     39
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          lyGluGluTyrIleProPheLysGlnTyrAlaGlyLysTyrIleLeuPheValAsnVa
 102261 : GGGAGGAGTACATCCCCTTTAAGCAGTACGCTGGCAAATACATCCTCTTTGTCAACGT : 102205

     40 : lAlaSerTyrUnkGlyLeuThrGlyGlnTyrVal{G}  >>>> Target Intron  :     51
          ||||||||||   |||||||||||||||||||||{|}            912 bp   
          lAlaSerTyr***GlyLeuThrGlyGlnTyrVal{G}++                   
 102204 : GGCCAGCTACTGAGGCCTGACGGGCCAGTACGTT{G}gt................... : 102166

     52 : 1 >>>>  {lu}LeuAsnAlaLeuGlnGluGluPheAlaProPheGlyLeuValIleL :     67
                  {||}|||||||||||||||||||||.!!||||||||||||||||||||||
                ++{lu}LeuAsnAlaLeuGlnGluGluLeuAlaProPheGlyLeuValIleL
 102165 : ......ag{AA}CTGAATGCACTACAGGAAGAACTTGCACCATTTGGTCTGGTCATTC : 101209

     68 : euGlyPheProSerAsnGlnPheGlyLysGlnGluProGlyGluAsnSerGluIlePr :     86
          |||||||||||!!!||||||||||||||||||||||||||||||||||||||||||! 
          euGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyGluAsnSerGluIleLe
 101208 : TGGGCTTCCCCTGCAACCAATTCGGAAAACAGGAACCAGGAGAGAACTCAGAGATCCT : 101152

     87 : oLeuThrLeu{Ly}  >>>> Target Intron 2 >>>>  {s}TyrValArgPro :     94
          !  !||||||{!:}            433 bp           {!}:!!|||||||||
          uAlaThrLeu{Ar}++                         ++{g}HisValArgPro
 101151 : AGCCACTCTC{AG}gt.........................ag{G}CATGTCCGACCA : 100695

     95 : GlyGlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluL :    114
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GlyGlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluL
 100694 : GGTGGGGGCTTCGTCCCCAATTTCCAGCTCTTTGAGAAAGGGGACGTGAATGGGGAGA : 100635

    115 : ysGluGlnLysPheTyrThrPheLeuLys  >>>> Target Intron 3 >>>>   :    124
          |||||||||||||||||||||||||||||            341 bp           
          ysGluGlnLysPheTyrThrPheLeuLys++                         ++
 100634 : AAGAACAGAAGTTCTACACATTCCTGAAGgt.........................ag : 100266

    125 : ArgTyrSerHisSerCysCysArg  >>>> Target Intron 4 >>>>  MetPr :    133
             :::...   ...      |||            49 bp            !   !
          SerTrpGluGlyGlyArgIleArg++                         ++AsnSe
 100265 : tcctgggaaggaggcaggataAGGgt.........................agAACTC : 100188

    134 : oValProProThrSerGluLeuLeuGlySerProAspArgLeuPheTrpGluProMet :    152
          !  !||||||||||||||||||||||||||||||! !||||||||||||!!:||||||
          rCysProProThrSerGluLeuLeuGlySerProGlyArgLeuPheTrpAspProMet
 100187 : CTGTCCTCCTACCTCGGAGCTCCTGGGCTCACCGGGCCGCCTCTTCTGGGATCCCATG : 100131

    153 : LysIleHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAspGlyLysP :    172
          |||:!!||||||||||||||||||||||||||||||||||||||||||||||||   |
          LysValHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAspGlyAlaP
 100130 : AAGGTCCATGACATCCGCTGGAACTTTGAGAAGTTCCTGGTGGGGCCAGATGGTGCTC : 100071

    173 : roIleMetArgTrpTyrHisArgThrThrValAsnThrValLysMetAspIleLeuAl :    191
          ||||||||||||||:!!|||||||||||||||||||||||||||||||||||||||.!
          roIleMetArgTrpHisHisArgThrThrValAsnThrValLysMetAspIleLeuTh
 100070 : CCATCATGCGCTGGCACCACCGCACCACGGTCAACACTGTCAAGATGGACATCCTGAC : 100014

    192 : aTyrMetArgArg :    195
          !||||||||||||
          rTyrMetArgArg
 100013 : CTACATGCGGCGC : 100000

vulgar: GPx3_caballus 0 195 . KI538108.1:subseq(803401,200182) 102319 99999 - 862 M 50 150 S 0 1 5 0 2 I 0 908 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 429 3 0 2 S 1 1 M 33 99 5 0 2 I 0 337 3 0 2 M 8 24 5 0 2 I 0 45 3 0 2 M 64 192
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	gene	100000	102319	862	-	.	gene_id 1 ; sequence GPx3_caballus ; gene_orientation +
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	cds	102169	102319	.	-	.	
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	exon	102169	102319	.	-	.	insertions 0 ; deletions 0
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	splice5	102167	102168	.	-	.	intron_id 1 ; splice_site "GT"
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	intron	101257	102168	.	-	.	intron_id 1
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	splice3	101257	101258	.	-	.	intron_id 0 ; splice_site "AG"
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	cds	101139	101256	.	-	.	
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	exon	101139	101256	.	-	.	insertions 0 ; deletions 0
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	splice5	101137	101138	.	-	.	intron_id 2 ; splice_site "GT"
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	intron	100706	101138	.	-	.	intron_id 2
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	splice3	100706	100707	.	-	.	intron_id 1 ; splice_site "AG"
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	cds	100606	100705	.	-	.	
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	exon	100606	100705	.	-	.	insertions 0 ; deletions 0
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	splice5	100604	100605	.	-	.	intron_id 3 ; splice_site "GT"
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	intron	100265	100605	.	-	.	intron_id 3
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	splice3	100265	100266	.	-	.	intron_id 2 ; splice_site "AG"
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	cds	100241	100264	.	-	.	
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	exon	100241	100264	.	-	.	insertions 0 ; deletions 0
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	splice5	100239	100240	.	-	.	intron_id 4 ; splice_site "GT"
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	intron	100192	100240	.	-	.	intron_id 4
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	splice3	100192	100193	.	-	.	intron_id 3 ; splice_site "AG"
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	cds	100000	100191	.	-	.	
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	exon	100000	100191	.	-	.	insertions 0 ; deletions 0
KI538108.1:subseq(803401,200182)	exonerate:protein2genome:local	similarity	100000	102319	862	-	.	alignment_id 1 ; Query GPx3_caballus ; Align 102320 1 150 ; Align 101255 52 114 ; Align 100705 91 99 ; Align 100265 124 24 ; Align 100192 132 192
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
